Package: pegas
Version: 1.4
Date: 2025-12-08
Title: Population and Evolutionary Genetics Analysis System
Authors@R: c(person("Emmanuel", "Paradis", role = c("aut", "cre", "cph"), email = "Emmanuel.Paradis@ird.fr", comment = c(ORCID = "0000-0003-3092-2199")),
  person("Thibaut", "Jombart", role = c("aut", "cph"), comment = c(ORCID = "0000-0003-2226-8692")),
  person("Zhian N.", "Kamvar", role = c("aut", "cph"), comment = c(ORCID = "0000-0003-1458-7108")),
  person("Brian", "Knaus", role = c("aut", "cph"), comment = c(ORCID = "0000-0003-1665-4343")),
  person("Klaus", "Schliep", role = c("aut", "cph"), comment = c(ORCID = "0000-0003-2941-0161")),
  person("Alastair", "Potts", role = c("aut", "cph"), comment = c(ORCID = "0000-0003-0919-7279")),
  person("David", "Winter", role = c("aut", "cph"), comment = c(ORCID = "0000-0002-6165-0029")))
Depends: R (>= 3.2.0), ape (>= 5.3-11)
Imports: graphics, utils, methods
Suggests: rgl, snpStats, adegenet
ZipData: no
Description: Functions for reading, writing, plotting, analysing, and
        manipulating allelic and haplotypic data, including from VCF
        files, and for the analysis of population nucleotide sequences
        and micro-satellites including coalescent analyses, linkage
        disequilibrium, population structure (Fst, Amova) and
        equilibrium (HWE), haplotype networks, minimum spanning tree
        and network, and median-joining networks.
License: GPL (>= 2)
URL: https://emmanuelparadis.github.io/pegas.html
NeedsCompilation: yes
Packaged: 2026-06-16 07:50:11 UTC; root
Author: Emmanuel Paradis [aut, cre, cph] (ORCID:
        <https://orcid.org/0000-0003-3092-2199>), Thibaut Jombart [aut,
        cph] (ORCID: <https://orcid.org/0000-0003-2226-8692>), Zhian N.
        Kamvar [aut, cph] (ORCID:
        <https://orcid.org/0000-0003-1458-7108>), Brian Knaus [aut,
        cph] (ORCID: <https://orcid.org/0000-0003-1665-4343>), Klaus
        Schliep [aut, cph] (ORCID:
        <https://orcid.org/0000-0003-2941-0161>), Alastair Potts [aut,
        cph] (ORCID: <https://orcid.org/0000-0003-0919-7279>), David
        Winter [aut, cph] (ORCID:
        <https://orcid.org/0000-0002-6165-0029>)
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Repository: https://emmanuelparadis.r-universe.dev
Date/Publication: 2025-12-08 08:49:10 UTC
RemoteUrl: https://github.com/cran/pegas
RemoteRef: HEAD
RemoteSha: ad51ab2875cb3c72541c7866523b221e3adeb264