Package: distory 1.4.5

distory: Distance Between Phylogenetic Histories

Geodesic distance between phylogenetic trees and associated functions. The theoretical background of 'distory' is published in Billera et al. (2001) "Geometry of the space of phylogenetic trees." <doi:10.1006/aama.2001.0759>.

Authors:John Chakerian [aut], Susan Holmes [aut], Emmanuel Paradis [cre]

distory_1.4.5.tar.gz
distory_1.4.5.zip(r-4.5)distory_1.4.5.zip(r-4.4)distory_1.4.5.zip(r-4.3)
distory_1.4.5.tgz(r-4.4-x86_64)distory_1.4.5.tgz(r-4.4-arm64)distory_1.4.5.tgz(r-4.3-x86_64)distory_1.4.5.tgz(r-4.3-arm64)
distory_1.4.5.tar.gz(r-4.5-noble)distory_1.4.5.tar.gz(r-4.4-noble)
distory_1.4.5.tgz(r-4.4-emscripten)distory_1.4.5.tgz(r-4.3-emscripten)
distory.pdf |distory.html✨
distory/json (API)
NEWS

# Install 'distory' in R:
install.packages('distory', repos = c('https://emmanuelparadis.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cpp

2.49 score 1 stars 3 packages 34 scripts 355 downloads 1 mentions 15 exports 5 dependencies

Last updated 3 months agofrom:2ad1a12110. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 06 2025
R-4.5-win-x86_64OKJan 06 2025
R-4.5-linux-x86_64OKJan 06 2025
R-4.4-win-x86_64OKJan 06 2025
R-4.4-mac-x86_64OKJan 06 2025
R-4.4-mac-aarch64OKJan 06 2025
R-4.3-win-x86_64OKJan 06 2025
R-4.3-mac-x86_64OKJan 06 2025
R-4.3-mac-aarch64OKJan 06 2025

Exports:bethe.treebin.multiPhyloboot.samples.idxsconvert.table.to.idxdist.multiPhylodistinct.edgesedge.from.splitget.bipartitiongromov.hyperbolicitylookup.samplesmcmc.target.seqorthant.boundary.treepartition.leavesphylo.diffposition.leverage

Dependencies:apedigestlatticenlmeRcpp

Readme and manuals

Help Manual

Help pageTopics
Distance Between Phylogenetic Historiesdistory-package distory
Bethe Treebethe.tree
Bin Treesbin.multiPhylo
Geodesic Distance Between Phylogenetic Treesdist.multiPhylo
Gromov Hyperbolicity Constantgromov.hyperbolicity
Find MCMC Target Sequenceboot.samples.idxs convert.table.to.idx lookup.samples mcmc.target.seq
Orthant Boundary Treeorthant.boundary.tree
Differences Between Phylogenetic Treesdistinct.edges edge.from.split get.bipartition partition.leaves phylo.diff
Position Leverageposition.leverage