Package: distory 1.4.5

distory: Distance Between Phylogenetic Histories

Geodesic distance between phylogenetic trees and associated functions. The theoretical background of 'distory' is published in Billera et al. (2001) "Geometry of the space of phylogenetic trees." <doi:10.1006/aama.2001.0759>.

Authors:John Chakerian [aut], Susan Holmes [aut], Emmanuel Paradis [cre]

distory_1.4.5.tar.gz
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distory_1.4.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
distory/json (API)

# Install 'distory' in R:
install.packages('distory', repos = c('https://emmanuelparadis.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cpp

2.39 score 1 stars 2 packages 41 scripts 648 downloads 1 mentions 15 exports 5 dependencies

Last updated from:2ad1a12110. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK101
linux-devel-x86_64OK100
source / vignettesOK154
linux-release-arm64OK119
linux-release-x86_64OK105
macos-release-arm64OK86
macos-release-x86_64OK187
macos-oldrel-arm64OK108
macos-oldrel-x86_64OK217
windows-develOK95
windows-releaseOK94
windows-oldrelOK83
wasm-releaseOK92

Exports:bethe.treebin.multiPhyloboot.samples.idxsconvert.table.to.idxdist.multiPhylodistinct.edgesedge.from.splitget.bipartitiongromov.hyperbolicitylookup.samplesmcmc.target.seqorthant.boundary.treepartition.leavesphylo.diffposition.leverage

Dependencies:apedigestlatticenlmeRcpp

Readme and manuals

Help Manual

Help pageTopics
Distance Between Phylogenetic Historiesdistory-package distory
Bethe Treebethe.tree
Bin Treesbin.multiPhylo
Geodesic Distance Between Phylogenetic Treesdist.multiPhylo
Gromov Hyperbolicity Constantgromov.hyperbolicity
Find MCMC Target Sequenceboot.samples.idxs convert.table.to.idx lookup.samples mcmc.target.seq
Orthant Boundary Treeorthant.boundary.tree
Differences Between Phylogenetic Treesdistinct.edges edge.from.split get.bipartition partition.leaves phylo.diff
Position Leverageposition.leverage