pegas - Population and Evolutionary Genetics Analysis System
Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.
Last updated 9 months ago
6.51 score 5 dependencies 18 dependentsdistory - Distance Between Phylogenetic Histories
Geodesic distance between phylogenetic trees and associated functions. The theoretical background of 'distory' is published in Billera et al. (2001) "Geometry of the space of phylogenetic trees." <doi:10.1006/aama.2001.0759>.
Last updated 4 years ago
1 stars 1.31 score 5 dependencies 3 dependents