Package: coalescentMCMC 0.4-4

coalescentMCMC: MCMC Algorithms for the Coalescent

Flexible framework for coalescent analyses in R. It includes a main function running the MCMC algorithm, auxiliary functions for tree rearrangement, and some functions to compute population genetic parameters. Extended description can be found in Paradis (2020) <doi:10.1201/9780429466700>. For details on the MCMC algorithm, see Kuhner et al. (1995) <doi:10.1093/genetics/140.4.1421> and Drummond et al. (2002) <doi:10.1093/genetics/161.3.1307>.

Authors:Emmanuel Paradis [aut, cre, cph]

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coalescentMCMC.pdf |coalescentMCMC.html✨
coalescentMCMC/json (API)
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16 exports 0.00 score 20 dependencies 18 scripts 315 downloads

Last updated 2 years agofrom:2c49aab762. Checks:OK: 9. Indexed: yes.

Exports:.coalescentMCMCenvcleanMCMCtreescoalescentMCMCdcoaldcoal.lineardcoal.stepdcoal.timedcoal.time2getLastTreegetMCMCstatsgetMCMCtreesNeighborhoodRearrangementplotTHETAproba.coalescentsaveMCMCtreessim.coalescent

Dependencies:apeclicodacpp11digestfastmatchgenericsglueigraphlatticelifecyclemagrittrMatrixnlmephangornpkgconfigquadprogRcpprlangvctrs